Chipster is a user-friendly software for analysing high-throughput data such as NGS and microarrays and provided as part of EGI's AoD service.
The software contains over 400 analysis tools and a large collection of reference genomes.
Users can save and share automatic analysis workflows, and visualize data interactively using for example the built-in genome browser.
The Chipster testbed configured at CESGA offers:
/cvmfs/tools_*
partition,For accessing this testbed you need to be a member of the Applications on Demand.
You need to create a temporary account to access the Chipster server, by default this account is valid for one month.
Go to Chipster entry in Science Software on Demand Portal and:
Please provide appropriate acknowledgement of the use in scientific publications. You can use this The following acknowledgement text this purpose:
This work used the EGI Applications on Demand service, which is co-funded by the EOSC-hub project (grant number 777536)