EC3 applications and tools

How to run scientific applications and tools with EC3

This section documents how to run some applications and use the existing tools with EC3.

How to run scientific applications in EC3

NAMD cluster

To deploy NAMD clusters, please select one of the available LRMS (Local Resource Management System) and choose NAMD from the list of applications.

How to use generic tools/practices in EC3

ECAS cluster

Check the dedicated ECAS documentation.

Kubernetes

Check the Cloud Container Compute documentation.

Mesos + Marathon + Chronos

To deploy a virtual cluster with Marathon, Mesos, and Chronos as an orchestration, please select Mesos + Marathon + Chronos from the list of available LRMS.

OSCAR cluster

To deploy Serverless computing for data-processing applications in EGI, please select OSCAR from the list of LRMS (Local Resource Management System). Use cases of applications that use the OSCAR framework for event-driven high-throughput processing of files:

  • Plants Classification, an application that performs plant classification using Lasagne/Theano.
  • ImageMagick, a tool to manipulate images.
  • Radiomics, a use case about the handling of Rheumatic Heart Disease (RHD) through image computing and Artificial Intelligence (AI).

SLURM cluster

To deploy SLURM clusters, please select SLURM from the list of available LRMS. See also the dedicated guide on HTC clusters


ECAS

Using Elastic Cloud Computing Cluster (EC3) platform to create an ECAS environment.

HTC

Using Elastic Cloud Computing Cluster (EC3) platform to create elastic virtual clusters on the EGI Cloud.

Last modified November 22, 2020: EC3 review (#151) (88ebfa6)